HL_4ADV_008

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ADV_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0827

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4ADV|1|A|A|320
4ADV|1|A|A|321
4ADV|1|A|C|322
4ADV|1|A|U|323
4ADV|1|A|G|324
4ADV|1|A|A|325
4ADV|1|A|G|326
4ADV|1|A|A|327
4ADV|1|A|C|328
4ADV|1|A|A|329
4ADV|1|A|C|330
4ADV|1|A|G|331
4ADV|1|A|G|332
4ADV|1|A|U|333

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20