HL_4ADV_015

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ADV_015 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.0693

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4ADV|1|A|C|689
4ADV|1|A|G|690
4ADV|1|A|G|691
4ADV|1|A|U|692
4ADV|1|A|G|693
4ADV|1|A|A|694
4ADV|1|A|A|695
4ADV|1|A|A|696
4ADV|1|A|U|697
4ADV|1|A|G|698

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11