HL_4BTS_006

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAUGAAUC

Length

8 nucleotides

Bulged bases

4BTS|1|AA|U|246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4BTS_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.135

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4BTS|1|AA|G|240
4BTS|1|AA|A|241
4BTS|1|AA|U|242
4BTS|1|AA|G|243
4BTS|1|AA|A|244
4BTS|1|AA|A|245
4BTS|1|AA|U|246
4BTS|1|AA|C|247

Current chains

Chain AA

18S ribosomal RNA

Nearby chains

Chain AQ

40S RIBOSOMAL PROTEIN RPS11E

Chain AW

40S RIBOSOMAL PROTEIN RPS4E

Chain AY

40S RIBOSOMAL PROTEIN S6