HL_4BTS_008

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGUAUUGGA

Length

9 nucleotides

Bulged bases

4BTS|1|AA|G|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4BTS_008 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1619

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4BTS|1|AA|U|321
4BTS|1|AA|G|322
4BTS|1|AA|U|323
4BTS|1|AA|A|324
4BTS|1|AA|U|325
4BTS|1|AA|U|326
4BTS|1|AA|G|327
4BTS|1|AA|G|328
4BTS|1|AA|A|329

Current chains

Chain AA

18S ribosomal RNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AQ

40S RIBOSOMAL PROTEIN RPS11E