HL_4BTS_100

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

4BTS|1|CA|G|1215, 4BTS|1|CA|G|1217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4BTS_100 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.4399

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4BTS|1|CA|A|1210
4BTS|1|CA|U|1211
4BTS|1|CA|U|1212
4BTS|1|CA|G|1213
4BTS|1|CA|A|1214
4BTS|1|CA|G|1215
4BTS|1|CA|A|1216
4BTS|1|CA|G|1217
4BTS|1|CA|C|1218
4BTS|1|CA|U|1219

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain C9

40S RIBOSOMAL PROTEIN RPS31E

Chain CN

40S RIBOSOMAL PROTEIN RPS29E

Chain CS

40S RIBOSOMAL PROTEIN RPS15E