HL_4CSU_004

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGAUAUGAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_004 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.358

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4CSU|1|B|U|87
4CSU|1|B|G|88
4CSU|1|B|A|89
4CSU|1|B|U|90
4CSU|1|B|A|91
4CSU|1|B|U|92
4CSU|1|B|G|93
4CSU|1|B|A|94
4CSU|1|B|A|95

Current chains

Chain B

23S RRNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L29

Chain T

50S RIBOSOMAL PROTEIN L23

Chain U

50S RIBOSOMAL PROTEIN L24