HL_4CSU_008

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4CSU|1|B|A|196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_008 not in the Motif Atlas

Geometric match to HL_4V9F_006

Geometric discrepancy: 0.139

The information below is about HL_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4CSU|1|B|G|194
4CSU|1|B|A|195
4CSU|1|B|A|196
4CSU|1|B|A|197
4CSU|1|B|C|198
4CSU|1|B|A|199
4CSU|1|B|U|200
4CSU|1|B|C|201

Current chains

Chain B

23S RRNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L28

Chain L

50S RIBOSOMAL PROTEIN L15