HL_4CSU_028

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4CSU|1|B|U|958, 4CSU|1|B|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_028 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.223

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4CSU|1|B|U|955
4CSU|1|B|G|956
4CSU|1|B|C|957
4CSU|1|B|U|958
4CSU|1|B|A|959
4CSU|1|B|A|960
4CSU|1|B|C|961
4CSU|1|B|G|962

Current chains

Chain B

23S RRNA

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain M

50S RIBOSOMAL PROTEIN L16