HL_4CSU_030

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4CSU|1|B|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_030 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4281

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4CSU|1|B|C|1064
4CSU|1|B|U|1065
4CSU|1|B|U|1066
4CSU|1|B|A|1067
4CSU|1|B|G|1068
4CSU|1|B|A|1069
4CSU|1|B|A|1070
4CSU|1|B|G|1071
4CSU|1|B|C|1072
4CSU|1|B|A|1073
4CSU|1|B|G|1074

Current chains

Chain B

23S RRNA

Nearby chains

Chain 9

GTPASE OBGE/CGTA

Chain I

50S RIBOSOMAL PROTEIN L11