HL_4CSU_056

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4CSU|1|B|A|2268, 4CSU|1|B|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_056 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.3372

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4CSU|1|B|C|2264
4CSU|1|B|U|2265
4CSU|1|B|A|2266
4CSU|1|B|A|2267
4CSU|1|B|A|2268
4CSU|1|B|G|2269
4CSU|1|B|A|2270
4CSU|1|B|G|2271
4CSU|1|B|U|2272
4CSU|1|B|A|2273
4CSU|1|B|A|2274
4CSU|1|B|C|2275
4CSU|1|B|G|2276

Current chains

Chain B

23S RRNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L16

Chain Y

50S RIBOSOMAL PROTEIN L27