HL_4CSU_063

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4CSU|1|B|G|2529

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_063 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.2492

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4CSU|1|B|U|2528
4CSU|1|B|G|2529
4CSU|1|B|A|2530
4CSU|1|B|A|2531
4CSU|1|B|G|2532
4CSU|1|B|U|2533
4CSU|1|B|A|2534
4CSU|1|B|G|2535

Current chains

Chain B

23S RRNA

Nearby chains

Chain 8

50S RIBOSOMAL PROTEIN L36

Chain 9

GTPASE OBGE/CGTA

Chain G

50S RIBOSOMAL PROTEIN L6