HL_4CSU_068

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4CSU|1|B|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_068 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1384

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4CSU|1|B|C|2745
4CSU|1|B|U|2746
4CSU|1|B|G|2747
4CSU|1|B|A|2748
4CSU|1|B|A|2749
4CSU|1|B|A|2750
4CSU|1|B|G|2751
4CSU|1|B|C|2752
4CSU|1|B|A|2753
4CSU|1|B|U|2754
4CSU|1|B|C|2755
4CSU|1|B|U|2756
4CSU|1|B|A|2757
4CSU|1|B|A|2758
4CSU|1|B|G|2759

Current chains

Chain B

23S RRNA

Nearby chains

Chain 8

50S RIBOSOMAL PROTEIN L36

Chain G

50S RIBOSOMAL PROTEIN L6