HL_4CUX_017

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4CUX|1|2|U|705, 4CUX|1|2|C|709, 4CUX|1|2|U|715, 4CUX|1|2|C|717, 4CUX|1|2|U|718, 4CUX|1|2|U|719, 4CUX|1|2|U|721, 4CUX|1|2|G|729, 4CUX|1|2|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39846.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4CUX|1|2|G|703
4CUX|1|2|C|704
4CUX|1|2|U|705
4CUX|1|2|A|706
4CUX|1|2|A|707
4CUX|1|2|C|708
4CUX|1|2|C|709
4CUX|1|2|U|710
4CUX|1|2|U|711
4CUX|1|2|G|712
4CUX|1|2|A|713
4CUX|1|2|G|714
4CUX|1|2|U|715
4CUX|1|2|C|716
4CUX|1|2|C|717
4CUX|1|2|U|718
4CUX|1|2|U|719
4CUX|1|2|G|720
4CUX|1|2|U|721
4CUX|1|2|G|722
4CUX|1|2|G|723
4CUX|1|2|C|724
4CUX|1|2|U|725
4CUX|1|2|C|726
4CUX|1|2|U|727
4CUX|1|2|U|728
4CUX|1|2|G|729
4CUX|1|2|G|730
4CUX|1|2|C|731
4CUX|1|2|G|732
4CUX|1|2|A|733
4CUX|1|2|A|734
4CUX|1|2|C|735

Current chains

Chain 2

18S RRNA

Nearby chains