HL_4CUX_044

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CUX_044 not in the Motif Atlas

Geometric match to HL_8P9A_209

Geometric discrepancy: 0.2161

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4CUX|1|2|A|900
4CUX|1|2|G|901
4CUX|1|2|G|902
4CUX|1|2|U|903
4CUX|1|2|G|904
4CUX|1|2|A|905
4CUX|1|2|A|906
4CUX|1|2|A|907
4CUX|1|2|U|908
4CUX|1|2|U|909

Current chains

Chain 2

18S RRNA

Nearby chains