HL_4CUX_045

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

4CUX|1|2|G|1243, 4CUX|1|2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CUX_045 not in the Motif Atlas

Geometric match to HL_8CRE_217

Geometric discrepancy: 0.3198

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4CUX|1|2|A|1238
4CUX|1|2|U|1239
4CUX|1|2|U|1240
4CUX|1|2|G|1241
4CUX|1|2|A|1242
4CUX|1|2|G|1243
4CUX|1|2|A|1244
4CUX|1|2|G|1245
4CUX|1|2|C|1246
4CUX|1|2|U|1247

Current chains

Chain 2

18S RRNA

Nearby chains