HL_4CUX_046

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

4CUX|1|2|U|1557, 4CUX|1|2|U|1558, 4CUX|1|2|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CUX_046 not in the Motif Atlas

Geometric match to HL_8CRE_223

Geometric discrepancy: 0.259

The information below is about HL_8CRE_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4CUX|1|2|A|1550
4CUX|1|2|U|1551
4CUX|1|2|U|1552
4CUX|1|2|G|1553
4CUX|1|2|U|1554
4CUX|1|2|A|1555
4CUX|1|2|A|1556
4CUX|1|2|U|1557
4CUX|1|2|U|1558
4CUX|1|2|A|1559
4CUX|1|2|U|1560
4CUX|1|2|U|1561

Current chains

Chain 2

18S RRNA

Nearby chains