HL_4CUX_047

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

4CUX|1|2|C|1596, 4CUX|1|2|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CUX_047 not in the Motif Atlas

Geometric match to HL_8CRE_224

Geometric discrepancy: 0.3237

The information below is about HL_8CRE_224

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4CUX|1|2|G|1594
4CUX|1|2|U|1595
4CUX|1|2|C|1596
4CUX|1|2|A|1597
4CUX|1|2|U|1598
4CUX|1|2|C|1599
4CUX|1|2|A|1600
4CUX|1|2|G|1601
4CUX|1|2|C|1602

Current chains

Chain 2

18S RRNA

Nearby chains