HL_4CXE_021

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

4CXE|1|2|U|1575, 4CXE|1|2|A|1579, 4CXE|1|2|A|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_021 not in the Motif Atlas

Geometric match to HL_8P9A_132

Geometric discrepancy: 0.1972

The information below is about HL_8P9A_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

4CXE|1|2|A|1572
4CXE|1|2|C|1573
4CXE|1|2|G|1574
4CXE|1|2|U|1575
4CXE|1|2|G|1576
4CXE|1|2|C|1577
4CXE|1|2|A|1578
4CXE|1|2|A|1579
4CXE|1|2|A|1580
4CXE|1|2|U|1581

Current chains

Chain 2

28S RRNA

Nearby chains