HL_4CXE_025

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

4CXE|1|2|G|1800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_025 not in the Motif Atlas

Geometric match to HL_8CRE_023

Geometric discrepancy: 0.3799

The information below is about HL_8CRE_023

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4CXE|1|2|C|1795
4CXE|1|2|U|1796
4CXE|1|2|G|1797
4CXE|1|2|G|1798
4CXE|1|2|C|1799
4CXE|1|2|G|1800
4CXE|1|2|U|1801
4CXE|1|2|G|1802

Current chains

Chain 2

28S RRNA

Nearby chains