HL_4CXE_042

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

4CXE|1|2|C|2771, 4CXE|1|2|G|2773, 4CXE|1|2|A|2775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_042 not in the Motif Atlas

Geometric match to HL_8P9A_152

Geometric discrepancy: 0.261

The information below is about HL_8P9A_152

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4CXE|1|2|C|2769
4CXE|1|2|G|2770
4CXE|1|2|C|2771
4CXE|1|2|A|2772
4CXE|1|2|G|2773
4CXE|1|2|C|2774
4CXE|1|2|A|2775
4CXE|1|2|G|2776

Current chains

Chain 2

28S RRNA

Nearby chains