HL_4CXE_044

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4CXE|1|2|U|2851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_044 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1711

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

4CXE|1|2|C|2849
4CXE|1|2|U|2850
4CXE|1|2|U|2851
4CXE|1|2|C|2852
4CXE|1|2|G|2853
4CXE|1|2|G|2854

Current chains

Chain 2

28S RRNA

Nearby chains