HL_4CXE_047

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

4CXE|1|2|A|3611, 4CXE|1|2|A|3612, 4CXE|1|2|U|3613, 4CXE|1|2|A|3617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_047 not in the Motif Atlas

Geometric match to HL_8P9A_157

Geometric discrepancy: 0.214

The information below is about HL_8P9A_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

4CXE|1|2|U|3608
4CXE|1|2|U|3609
4CXE|1|2|U|3610
4CXE|1|2|A|3611
4CXE|1|2|A|3612
4CXE|1|2|U|3613
4CXE|1|2|U|3614
4CXE|1|2|A|3615
4CXE|1|2|A|3616
4CXE|1|2|A|3617
4CXE|1|2|A|3618

Current chains

Chain 2

28S RRNA

Nearby chains