HL_4CXE_056

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

4CXE|1|2|A|4174, 4CXE|1|2|C|4181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_056 not in the Motif Atlas

Geometric match to HL_8P9A_166

Geometric discrepancy: 0.1481

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4CXE|1|2|U|4170
4CXE|1|2|C|4171
4CXE|1|2|A|4172
4CXE|1|2|A|4173
4CXE|1|2|A|4174
4CXE|1|2|C|4175
4CXE|1|2|G|4176
4CXE|1|2|G|4177
4CXE|1|2|U|4178
4CXE|1|2|A|4179
4CXE|1|2|A|4180
4CXE|1|2|C|4181
4CXE|1|2|G|4182

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA