HL_4CXE_061

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

4CXE|1|2|U|4314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_061 not in the Motif Atlas

Geometric match to HL_7JRT_001

Geometric discrepancy: 0.3609

The information below is about HL_7JRT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36265.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4CXE|1|2|U|4312
4CXE|1|2|U|4313
4CXE|1|2|U|4314
4CXE|1|2|G|4315
4CXE|1|2|G|4316
4CXE|1|2|G|4317
4CXE|1|2|U|4318
4CXE|1|2|U|4319
4CXE|1|2|U|4320
4CXE|1|2|U|4321
4CXE|1|2|A|4322

Current chains

Chain 2

28S RRNA

Nearby chains