HL_4CXE_064

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_064 not in the Motif Atlas

Geometric match to HL_8P9A_174

Geometric discrepancy: 0.2122

The information below is about HL_8P9A_174

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4CXE|1|2|U|4457
4CXE|1|2|U|4458
4CXE|1|2|G|4459
4CXE|1|2|U|4460
4CXE|1|2|U|4461
4CXE|1|2|C|4462
4CXE|1|2|A|4463

Current chains

Chain 2

28S RRNA

Nearby chains