HL_4CXE_068

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

4CXE|1|2|C|4653, 4CXE|1|2|G|4654, 4CXE|1|2|C|4658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_068 not in the Motif Atlas

Geometric match to HL_8P9A_178

Geometric discrepancy: 0.2141

The information below is about HL_8P9A_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

4CXE|1|2|C|4648
4CXE|1|2|U|4649
4CXE|1|2|G|4650
4CXE|1|2|A|4651
4CXE|1|2|A|4652
4CXE|1|2|C|4653
4CXE|1|2|G|4654
4CXE|1|2|C|4655
4CXE|1|2|C|4656
4CXE|1|2|U|4657
4CXE|1|2|C|4658
4CXE|1|2|U|4659
4CXE|1|2|A|4660
4CXE|1|2|A|4661
4CXE|1|2|G|4662

Current chains

Chain 2

28S RRNA

Nearby chains