HL_4CXE_078

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

4CXE|1|2|C|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_078 not in the Motif Atlas

Geometric match to HL_8P9A_117

Geometric discrepancy: 0.1565

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

4CXE|1|2|U|201
4CXE|1|2|C|202
4CXE|1|2|U|203
4CXE|1|2|G|204
4CXE|1|2|A|205
4CXE|1|2|U|206
4CXE|1|2|C|207
4CXE|1|2|G|208

Current chains

Chain 2

28S RRNA

Nearby chains