HL_4CXE_079

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

4CXE|1|2|G|283, 4CXE|1|2|G|284, 4CXE|1|2|A|286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_079 not in the Motif Atlas

Geometric match to HL_8P9A_120

Geometric discrepancy: 0.3121

The information below is about HL_8P9A_120

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

4CXE|1|2|C|280
4CXE|1|2|U|281
4CXE|1|2|U|282
4CXE|1|2|G|283
4CXE|1|2|G|284
4CXE|1|2|G|285
4CXE|1|2|A|286
4CXE|1|2|A|287
4CXE|1|2|U|288
4CXE|1|2|G|289

Current chains

Chain 2

28S RRNA

Nearby chains