HL_4D5L_003

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

4D5L|1|1|U|160, 4D5L|1|1|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5L_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2635

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4D5L|1|1|G|156
4D5L|1|1|U|157
4D5L|1|1|A|158
4D5L|1|1|A|159
4D5L|1|1|U|160
4D5L|1|1|U|161
4D5L|1|1|C|162

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain G

40S RIBOSOMAL PROTEIN RACK1

Chain Y

40S RIBOSOMAL PROTEIN ES24