HL_4D5L_008

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5L_008 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1509

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4D5L|1|1|U|416
4D5L|1|1|C|417
4D5L|1|1|A|418
4D5L|1|1|G|419
4D5L|1|1|G|420
4D5L|1|1|G|421

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain C

40S RIBOSOMAL PROTEIN ES28

Chain J

40S RIBOSOMAL PROTEIN US4

Chain L

40S RIBOSOMAL PROTEIN US17

Chain W

40S RIBOSOMAL PROTEIN US8