3D structure

PDB id
4D5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method
ELECTRON MICROSCOPY
Resolution
9 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4D5L_009 not in the Motif Atlas
Homologous match to HL_4V88_195
Geometric discrepancy: 0.2657
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4D5L|1|1|C|441
4D5L|1|1|C|442
4D5L|1|1|U|443
4D5L|1|1|G|444
4D5L|1|1|A|445
4D5L|1|1|G|446
4D5L|1|1|A|447
4D5L|1|1|A|448
4D5L|1|1|A|449
4D5L|1|1|C|450
4D5L|1|1|G|451
4D5L|1|1|G|452

Current chains

Chain 1
18S RRNA 2

Nearby chains

Chain E
40S RIBOSOMAL PROTEIN ES30
Chain G
40S RIBOSOMAL PROTEIN RACK1
Chain I
40S RIBOSOMAL PROTEIN ES8
Chain Y
40S RIBOSOMAL PROTEIN ES24

Coloring options:


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