HL_4D5L_045

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

4D5L|1|1|U|1300, 4D5L|1|1|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5L_045 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.2249

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4D5L|1|1|A|1295
4D5L|1|1|U|1296
4D5L|1|1|U|1297
4D5L|1|1|G|1298
4D5L|1|1|A|1299
4D5L|1|1|U|1300
4D5L|1|1|A|1301
4D5L|1|1|G|1302
4D5L|1|1|C|1303
4D5L|1|1|U|1304

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain P

40S RIBOSOMAL PROTEIN US19

Chain d

40S RIBOSOMAL PROTEIN US3

Chain f

40S RIBOSOMAL PROTEIN US7