HL_4D5N_003

3D structure

PDB id

4D5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

4D5N|1|X|C|6146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5N_003 not in the Motif Atlas

Homologous match to HL_2IL9_003

Geometric discrepancy: 0.4931

The information below is about HL_2IL9_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4D5N|1|X|G|6141
4D5N|1|X|C|6142
4D5N|1|X|A|6143
4D5N|1|X|G|6144
4D5N|1|X|C|6145
4D5N|1|X|C|6146
4D5N|1|X|C|6147

Current chains

Chain X

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains