HL_4D5N_005

3D structure

PDB id

4D5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AUUAGGUAGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5N_005 not in the Motif Atlas

Geometric match to HL_3B31_001

Geometric discrepancy: 0.1179

The information below is about HL_3B31_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92697.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4D5N|1|X|A|6184
4D5N|1|X|U|6185
4D5N|1|X|U|6186
4D5N|1|X|A|6187
4D5N|1|X|G|6188
4D5N|1|X|G|6189
4D5N|1|X|U|6190
4D5N|1|X|A|6191
4D5N|1|X|G|6192
4D5N|1|X|U|6193

Current chains

Chain X

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains

Chain A

EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1