HL_4D5Y_016

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_016 not in the Motif Atlas

Homologous match to HL_5TBW_016

Geometric discrepancy: 0.1064

The information below is about HL_5TBW_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4D5Y|1|2|U|1369
4D5Y|1|2|G|1370
4D5Y|1|2|A|1371
4D5Y|1|2|A|1372
4D5Y|1|2|G|1373
4D5Y|1|2|G|1374

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain L

60S RIBOSOMAL PROTEIN EL13

Chain Q

60S RIBOSOMAL PROTEIN EL18

Chain a

60S RIBOSOMAL PROTEIN UL15

Chain i

60S RIBOSOMAL PROTEIN EL36