HL_4D5Y_039

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_039 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5416

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4D5Y|1|2|G|2641
4D5Y|1|2|U|2642
4D5Y|1|2|U|2643
4D5Y|1|2|C|2644
4D5Y|1|2|G|2645
4D5Y|1|2|C|2646
4D5Y|1|2|C|2647

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain R

60S RIBOSOMAL PROTEIN UL19

Chain p

60S RIBOSOMAL PROTEIN EL43