HL_4D5Y_048

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

4D5Y|1|2|C|3642

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_048 not in the Motif Atlas

Homologous match to HL_5TBW_047

Geometric discrepancy: 0.2074

The information below is about HL_5TBW_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4D5Y|1|2|C|3637
4D5Y|1|2|G|3638
4D5Y|1|2|C|3639
4D5Y|1|2|G|3640
4D5Y|1|2|G|3641
4D5Y|1|2|C|3642
4D5Y|1|2|G|3643

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN UL2

Chain G

60S RIBOSOMAL PROTEIN EL8

Chain N

60S RIBOSOMAL PROTEIN EL15