HL_4D5Y_051

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

4D5Y|1|2|U|3771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_051 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.2244

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4D5Y|1|2|U|3765
4D5Y|1|2|C|3766
4D5Y|1|2|U|3767
4D5Y|1|2|A|3768
4D5Y|1|2|A|3769
4D5Y|1|2|U|3770
4D5Y|1|2|U|3771
4D5Y|1|2|A|3772
4D5Y|1|2|G|3773

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain V

60S RIBOSOMAL PROTEIN UL14