HL_4D5Y_056
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 4D5Y|1|2|A|4174, 4D5Y|1|2|C|4181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5Y_056 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.1509
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
4D5Y|1|2|U|4170
4D5Y|1|2|C|4171
4D5Y|1|2|A|4172
4D5Y|1|2|A|4173
4D5Y|1|2|A|4174
4D5Y|1|2|C|4175
4D5Y|1|2|G|4176
4D5Y|1|2|G|4177
4D5Y|1|2|U|4178
4D5Y|1|2|A|4179
4D5Y|1|2|A|4180
4D5Y|1|2|C|4181
4D5Y|1|2|G|4182
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain I
- 60S RIBOSOMAL PROTEIN UL16
- Chain T
- 60S RIBOSOMAL PROTEIN EL21
- Chain b
- 60S RIBOSOMAL PROTEIN EL29
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