HL_4D5Y_072
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5Y_072 not in the Motif Atlas
- Geometric match to HL_7A0S_001
- Geometric discrepancy: 0.3025
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4D5Y|1|3|C|47
4D5Y|1|3|A|48
4D5Y|1|3|G|49
4D5Y|1|3|C|50
4D5Y|1|3|U|51
4D5Y|1|3|A|52
4D5Y|1|3|G|53
4D5Y|1|3|C|54
4D5Y|1|3|U|55
4D5Y|1|3|G|56
Current chains
- Chain 3
- 5.8S Ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S RIBOSOMAL PROTEIN UL23
- Chain h
- 60S RIBOSOMAL PROTEIN UL29
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
- Chain l
- 60S RIBOSOMAL PROTEIN EL39
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