HL_4D5Y_073
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UGAAUUGCAGGACACAUUGA
- Length
- 20 nucleotides
- Bulged bases
- 4D5Y|1|3|C|83, 4D5Y|1|3|U|85
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5Y_073 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.2945
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4D5Y|1|3|U|69
4D5Y|1|3|G|70
4D5Y|1|3|A|71
4D5Y|1|3|A|72
4D5Y|1|3|U|73
4D5Y|1|3|U|74
4D5Y|1|3|G|75
4D5Y|1|3|C|76
4D5Y|1|3|A|77
4D5Y|1|3|G|78
4D5Y|1|3|G|79
4D5Y|1|3|A|80
4D5Y|1|3|C|81
4D5Y|1|3|A|82
4D5Y|1|3|C|83
4D5Y|1|3|A|84
4D5Y|1|3|U|85
4D5Y|1|3|U|86
4D5Y|1|3|G|87
4D5Y|1|3|A|88
Current chains
- Chain 3
- 5.8S Ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S RIBOSOMAL PROTEIN UL24
- Chain h
- 60S RIBOSOMAL PROTEIN UL29
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
- Chain l
- 60S RIBOSOMAL PROTEIN EL39
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