HL_4D5Y_078

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

4D5Y|1|2|C|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_078 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.1675

The information below is about HL_8P9A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4D5Y|1|2|U|201
4D5Y|1|2|C|202
4D5Y|1|2|U|203
4D5Y|1|2|G|204
4D5Y|1|2|A|205
4D5Y|1|2|U|206
4D5Y|1|2|C|207
4D5Y|1|2|G|208

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN UL4

Chain Y

60S RIBOSOMAL PROTEIN UL24

Chain e

60S RIBOSOMAL PROTEIN EL32