HL_4D61_027

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

4D61|1|1|U|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D61_027 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2359

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4D61|1|1|G|1366
4D61|1|1|U|1367
4D61|1|1|U|1368
4D61|1|1|A|1369
4D61|1|1|A|1370
4D61|1|1|U|1371
4D61|1|1|U|1372
4D61|1|1|C|1373

Current chains

Chain 1

18S RRNA

Nearby chains

Chain R

40S RIBOSOMAL PROTEIN S17