HL_4D67_007
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 4D67|1|2|G|229, 4D67|1|2|U|230, 4D67|1|2|G|231
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D67_007 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.1838
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
4D67|1|2|G|227
4D67|1|2|U|228
4D67|1|2|G|229
4D67|1|2|U|230
4D67|1|2|G|231
4D67|1|2|A|232
4D67|1|2|G|233
4D67|1|2|G|234
4D67|1|2|C|235
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S RIBOSOMAL PROTEIN L4
- Chain Y
- 60S RIBOSOMAL PROTEIN L26
Coloring options: