HL_4D67_023

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

4D67|1|2|C|1655, 4D67|1|2|A|1658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.5724

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4D67|1|2|C|1654
4D67|1|2|C|1655
4D67|1|2|U|1656
4D67|1|2|C|1657
4D67|1|2|A|1658
4D67|1|2|G|1659

Current chains

Chain 2

28S RRNA

Nearby chains

Chain a

60S RIBOSOMAL PROTEIN L27A

Chain b

60S RIBOSOMAL PROTEIN L29