HL_4D67_044

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4D67|1|2|U|2851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_044 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1622

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4D67|1|2|C|2849
4D67|1|2|U|2850
4D67|1|2|U|2851
4D67|1|2|C|2852
4D67|1|2|G|2853
4D67|1|2|G|2854

Current chains

Chain 2

28S RRNA

Nearby chains

Chain n

60S RIBOSOMAL PROTEIN L41

Chain p

60S RIBOSOMAL PROTEIN L37A