HL_4D67_050

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

4D67|1|2|A|3729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_050 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.5571

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4D67|1|2|G|3726
4D67|1|2|U|3727
4D67|1|2|A|3728
4D67|1|2|A|3729
4D67|1|2|C|3730
4D67|1|2|U|3731
4D67|1|2|A|3732
4D67|1|2|U|3733
4D67|1|2|G|3734
4D67|1|2|A|3735
4D67|1|2|C|3736

Current chains

Chain 2

28S RRNA

Nearby chains