HL_4D67_062

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.368

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4D67|1|2|C|4377
4D67|1|2|G|4378
4D67|1|2|U|4379
4D67|1|2|U|4380
4D67|1|2|C|4381
4D67|1|2|A|4382
4D67|1|2|U|4383
4D67|1|2|A|4384
4D67|1|2|G|4385

Current chains

Chain 2

28S RRNA

Nearby chains

Chain I

60S RIBOSOMAL PROTEIN L10

Chain m

UBIQUITIN-60S RIBOSOMAL PROTEIN L40