HL_4D67_063

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

4D67|1|2|G|4435

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_063 not in the Motif Atlas

Homologous match to HL_9AXU_058

Geometric discrepancy: 0.4474

The information below is about HL_9AXU_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34245.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4D67|1|2|A|4433
4D67|1|2|A|4434
4D67|1|2|G|4435
4D67|1|2|C|4436
4D67|1|2|A|4437
4D67|1|2|G|4438
4D67|1|2|A|4439
4D67|1|2|A|4440
4D67|1|2|U|4441
4D67|1|2|U|4442

Current chains

Chain 2

28S RRNA

Nearby chains

Chain H

60S RIBOSOMAL PROTEIN L9

Chain m

UBIQUITIN-60S RIBOSOMAL PROTEIN L40