HL_4D67_068

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

4D67|1|2|G|4654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_068 not in the Motif Atlas

Homologous match to HL_5TBW_067

Geometric discrepancy: 0.2112

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4D67|1|2|C|4648
4D67|1|2|U|4649
4D67|1|2|G|4650
4D67|1|2|A|4651
4D67|1|2|A|4652
4D67|1|2|C|4653
4D67|1|2|G|4654
4D67|1|2|C|4655
4D67|1|2|C|4656
4D67|1|2|U|4657
4D67|1|2|C|4658
4D67|1|2|U|4659
4D67|1|2|A|4660
4D67|1|2|A|4661
4D67|1|2|G|4662

Current chains

Chain 2

28S RRNA

Nearby chains

Chain H

60S RIBOSOMAL PROTEIN L9

Chain O

60S RIBOSOMAL PROTEIN L13A

Chain m

UBIQUITIN-60S RIBOSOMAL PROTEIN L40